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Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx3Achievement: Starstruckx3Achievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx3Achievement: Starstruckx3Achievement: Arctic Code Vault Contributor

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@yanlilab @mbioinfo

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shenwei356/README.md

Wei Shen 沈 伟

Bioinformatician
Chongqing Medical University, China

Github | Twitter | Biostars | Google Scholar | ORCID

Personal site: http://shenwei.me, Lab site: https://mbio.info

I'm grateful to users who have greatly helped to report bugs and suggest new features.
I may respond to issues or fix bugs quickly, but I usually implement new features periodically (two or more weeks).

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  1. LexicMap Public

    LexicMap: efficient sequence alignment against millions of prokaryotic genomes

    Go 149 4

  2. kmcp Public

    Accurate metagenomic profiling && Fast large-scale sequence/genome searching

    Go 193 14

  3. unikmer Public

    A versatile toolkit for k-mers with taxonomic information

    Go 78 7

  4. taxonkit Public

    A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

    Go 429 32

  5. seqkit Public

    A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

    Go 1.4k 169

  6. csvtk Public

    A cross-platform, efficient and practical CSV/TSV toolkit in Golang

    Go 1.1k 93

580 contributions in the last year

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Activity overview

Contributed to shenwei356/LexicMap, shenwei356/csvtk, shenwei356/seqkit and 40 other repositories
Loading A graph representing shenwei356's contributions from July 14, 2024 to July 16, 2025. The contributions are 92% commits, 5% pull requests, 3% issues, 0% code review.

Contribution activity

July 2025

Created 7 commits in 3 repositories
Opened 1 pull request in 1 repository
AllTheBacteria/AllTheBacteria 1 open
1 contribution in private repositories Jul 16
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