Point terminology meta configs to docs instead of GitHub #589
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| name: tuva_internal_dbt_v1.8.6 | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| - 'minor-release*' | |
| - 'release*' | |
| workflow_dispatch: # for manual triggering | |
| concurrency: | |
| # Ensure only one instance of this workflow runs across all PRs to prevent database conflicts | |
| group: ci-testing | |
| # Don't cancel in-progress runs automatically | |
| cancel-in-progress: false | |
| env: | |
| PYTHON_VERSION: '3.9' | |
| LINT_SCRIPT_PATH: ./lint_tuva_project.sh | |
| ####### Secrets ####### | |
| ####### BigQuery | |
| TUVA_BIGQUERY_TOKEN: ${{ secrets.TUVA_BIGQUERY_TOKEN }} | |
| TUVA_BIGQUERY_PROJECT: ${{ secrets.TUVA_BIGQUERY_PROJECT }} | |
| ####### Fabric | |
| DBT_FABRIC_CI_HOST: ${{ secrets.DBT_FABRIC_CI_HOST }} | |
| DBT_FABRIC_SERVICE_PRINCIPAL_ID: ${{ secrets.DBT_FABRIC_SERVICE_PRINCIPAL_ID }} | |
| DBT_FABRIC_SERVICE_PRINCIPAL_SECRET: ${{ secrets.DBT_FABRIC_SERVICE_PRINCIPAL_SECRET }} | |
| DBT_FABRIC_TENANT_ID: ${{ secrets.DBT_FABRIC_TENANT_ID }} | |
| DBT_FABRIC_CI_DATABASE: ${{ secrets.DBT_FABRIC_CI_DATABASE }} | |
| DBT_FABRIC_CI_SCHEMA: ${{ secrets.DBT_FABRIC_CI_SCHEMA }} | |
| ####### Redshift | |
| DBT_REDSHIFT_CI_HOST: ${{ secrets.DBT_REDSHIFT_CI_HOST }} | |
| DBT_REDSHIFT_CI_USER: ${{ secrets.DBT_REDSHIFT_CI_USER }} | |
| DBT_REDSHIFT_CI_PASSWORD: ${{ secrets.DBT_REDSHIFT_CI_PASSWORD }} | |
| ####### Snowflake | |
| DBT_TUVA_SNOWFLAKE_ACCOUNT: ${{ secrets.DBT_TUVA_SNOWFLAKE_ACCOUNT }} | |
| DBT_TUVA_CI_DATABASE: ${{ secrets.DBT_TUVA_CI_DATABASE }} | |
| DBT_SNOWFLAKE_CI_PASSWORD: ${{ secrets.DBT_SNOWFLAKE_CI_PASSWORD }} | |
| DBT_SNOWFLAKE_CI_ROLE: ${{ secrets.DBT_SNOWFLAKE_CI_ROLE }} | |
| DBT_SNOWFLAKE_CI_SCHEMA: ${{ secrets.DBT_SNOWFLAKE_CI_SCHEMA }} | |
| DBT_SNOWFLAKE_CI_USER: ${{ secrets.DBT_SNOWFLAKE_CI_USER }} | |
| DBT_SNOWFLAKE_CI_WAREHOUSE: ${{ secrets.DBT_SNOWFLAKE_CI_WAREHOUSE }} | |
| # Permissions needed for the comment action | |
| permissions: | |
| contents: read | |
| pull-requests: write | |
| jobs: | |
| # ============================================================================ | |
| # Linting Job (Runs First) | |
| # ============================================================================ | |
| sqlfluff-lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up Python ${{ env.PYTHON_VERSION }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| # Install dbt adapter needed for compile/lint (using Snowflake here) | |
| # Also install sqlfluff | |
| pip install dbt-core==1.8.6 dbt-snowflake sqlfluff==3.3.1 sqlfluff-templater-dbt | |
| # --- Setup dbt Profile for Linting --- | |
| - name: Create dbt profiles directory | |
| run: mkdir -p ~/.dbt | |
| - name: Create dbt profiles.yml for Snowflake (for linting context) | |
| run: | | |
| echo "default: | |
| outputs: | |
| dev: | |
| account: \"{{ env_var('DBT_TUVA_SNOWFLAKE_ACCOUNT') }}\" | |
| database: dev_ci_testing | |
| password: \"{{ env_var('DBT_SNOWFLAKE_CI_PASSWORD') }}\" | |
| role: \"{{ env_var('DBT_SNOWFLAKE_CI_ROLE') }}\" | |
| schema: \"{{ env_var('DBT_SNOWFLAKE_CI_SCHEMA') }}\" | |
| threads: 8 | |
| type: snowflake | |
| user: \"{{ env_var('DBT_SNOWFLAKE_CI_USER') }}\" | |
| warehouse: \"{{ env_var('DBT_SNOWFLAKE_CI_WAREHOUSE') }}\" | |
| target: dev" > ~/.dbt/profiles.yml | |
| - name: Check if lint script exists | |
| run: | | |
| if [ ! -f "${{ env.LINT_SCRIPT_PATH }}" ]; then | |
| echo "Error: Lint script not found at ${{ env.LINT_SCRIPT_PATH }}" | |
| exit 1 | |
| fi | |
| - name: Make lint script executable | |
| run: chmod +x ${{ env.LINT_SCRIPT_PATH }} | |
| - name: Run SQLFluff Lint Check Script | |
| id: lint_script | |
| run: bash ${{ env.LINT_SCRIPT_PATH }} --ci | |
| # --- Failure Handling --- | |
| # Intermediate step to read file content reliably on failure | |
| - name: Read Lint Output File on Failure | |
| id: read-lint-output | |
| # Run only if the lint_script step failed | |
| if: failure() && steps.lint_script.outcome == 'failure' | |
| run: | | |
| output_file="SQLFLUFF_LINTER_OUTPUT.TXT" # Matches script variable | |
| if [ -f "$output_file" ]; then | |
| # Read the file content, preserving newlines | |
| content=$(cat "$output_file") | |
| else | |
| content="Lint output file ($output_file) not found." | |
| fi | |
| content="${content//'%'/'%25'}" | |
| EOF_MARKER=$(uuidgen) | |
| echo "content<<${EOF_MARKER}" >> $GITHUB_OUTPUT | |
| echo "$content" >> $GITHUB_OUTPUT | |
| echo "${EOF_MARKER}" >> $GITHUB_OUTPUT | |
| shell: bash | |
| - name: Create Comment on PR Failure | |
| # Run only if lint_script failed and it's a pull request event | |
| if: failure() && steps.lint_script.outcome == 'failure' && github.event_name == 'pull_request' | |
| uses: peter-evans/create-or-update-comment@v4 | |
| with: | |
| issue-number: ${{ github.event.pull_request.number }} | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| body: | | |
| ❌ **SQLFluff Linting Failed** | |
| Issues were found that require manual correction or are unfixable by `sqlfluff fix`. | |
| Please review the output below (or the full logs), fix the issues locally, and commit the changes. | |
| ```text | |
| ${{ steps.read-lint-output.outputs.content }} | |
| ``` | |
| # ============================================================================ | |
| # Build Jobs (Run only if Linting Passes) | |
| # ============================================================================ | |
| ####### BigQuery | |
| bigquery_clinical_and_claims_enabled: | |
| needs: sqlfluff-lint | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - name: Install dbt-core and BigQuery adapter | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install dbt-core==1.8.6 dbt-bigquery | |
| - name: Create dbt profiles.yml for BigQuery | |
| run: | | |
| mkdir -p ./profiles/bigquery | |
| echo "default: | |
| outputs: | |
| dev: | |
| type: bigquery | |
| method: service-account | |
| project: dev-ci-testing | |
| keyfile: ./creds.json | |
| dataset: connector | |
| threads: 8 | |
| timeout_seconds: 300 | |
| priority: interactive | |
| target: dev" > ./profiles/bigquery/profiles.yml | |
| working-directory: ci_testing | |
| - name: Create BigQuery credentials file | |
| run: | | |
| echo "${{ secrets.TUVA_BIGQUERY_TOKEN }}" | base64 --decode > ./creds.json | |
| working-directory: ci_testing | |
| - name: dbt-deps | |
| run: dbt deps --profiles-dir ./profiles/bigquery | |
| working-directory: ci_testing | |
| - name: dbt-debug | |
| run: dbt debug --profiles-dir ./profiles/bigquery | |
| working-directory: ci_testing | |
| - name: dbt-build | |
| run: | | |
| dbt build --full-refresh --profiles-dir ./profiles/bigquery --vars '{"use_synthetic_data": true,"clinical_enabled": true,"claims_enabled": true,"provider_attribution_enabled":true,"fhir_preprocessing_enabled":true}' | |
| working-directory: ci_testing | |
| - name: Get the result | |
| if: ${{ always() }} | |
| run: echo "${{ steps.dbt-build.outputs.result }}" | |
| shell: bash | |
| ####### Fabric | |
| fabric_clinical_and_claims_enabled: | |
| needs: sqlfluff-lint | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - name: Install ODBC Driver 18 for SQL Server | |
| run: | | |
| curl https://packages.microsoft.com/keys/microsoft.asc | sudo apt-key add - | |
| curl https://packages.microsoft.com/config/ubuntu/$(lsb_release -rs)/prod.list | sudo tee /etc/apt/sources.list.d/msprod.list | |
| sudo apt-get update | |
| sudo ACCEPT_EULA=Y apt-get install -y msodbcsql18 | |
| - name: Install dbt-core and Fabric adapter | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install dbt-core==1.8.6 dbt-fabric | |
| - name: dbt-deps | |
| run: dbt deps --profiles-dir ./profiles/fabric | |
| working-directory: ci_testing | |
| - name: dbt-debug | |
| run: dbt debug --profiles-dir ./profiles/fabric | |
| working-directory: ci_testing | |
| - name: dbt-build | |
| run: | | |
| dbt build --full-refresh --profiles-dir ./profiles/fabric --vars '{"use_synthetic_data": true,"clinical_enabled":true,"claims_enabled":true,"provider_attribution_enabled":true,"fhir_preprocessing_enabled":true}' | |
| working-directory: ci_testing | |
| - name: Get the result | |
| if: ${{ always() }} | |
| run: echo "${{ steps.dbt-build.outputs.result }}" | |
| shell: bash | |
| ####### Redshift | |
| redshift_clinical_and_claims_enabled: | |
| needs: sqlfluff-lint | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - name: Install dbt-core and Redshift adapter | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install dbt-core==1.8.6 dbt-redshift | |
| - name: dbt-deps | |
| run: dbt deps --profiles-dir ./profiles/redshift | |
| working-directory: ci_testing | |
| - name: dbt-debug | |
| run: dbt debug --profiles-dir ./profiles/redshift | |
| working-directory: ci_testing | |
| - name: dbt-build | |
| run: | | |
| dbt build --full-refresh --profiles-dir ./profiles/redshift --vars '{"use_synthetic_data": true,"clinical_enabled": true,"claims_enabled": true,"provider_attribution_enabled":true,"fhir_preprocessing_enabled":true}' | |
| working-directory: ci_testing | |
| - name: Get the result | |
| if: ${{ always() }} | |
| run: echo "${{ steps.dbt-build.outputs.result }}" | |
| shell: bash | |
| ####### Snowflake | |
| snowflake_clinical_and_claims_enabled: | |
| needs: sqlfluff-lint | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - name: Install dbt-core and Snowflake adapter | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install dbt-core==1.8.6 dbt-snowflake | |
| - name: dbt-deps | |
| run: dbt deps --profiles-dir ./profiles/snowflake | |
| working-directory: ci_testing | |
| - name: dbt-debug | |
| run: dbt debug --profiles-dir ./profiles/snowflake | |
| working-directory: ci_testing | |
| - name: dbt-build | |
| run: | | |
| dbt build --full-refresh --profiles-dir ./profiles/snowflake --vars '{"use_synthetic_data": true,"clinical_enabled":true,"claims_enabled":true,"fhir_preprocessing_enabled":true}' | |
| working-directory: ci_testing | |
| - name: Get the result | |
| if: ${{ always() }} | |
| run: echo "${{ steps.dbt-build.outputs.result }}" | |
| shell: bash | |
| snowflake_claims_enabled: | |
| runs-on: ubuntu-latest | |
| needs: snowflake_clinical_and_claims_enabled | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - name: Install dbt-core and Snowflake adapter | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install dbt-core==1.8.6 dbt-snowflake | |
| - name: dbt-deps | |
| run: dbt deps --profiles-dir ./profiles/snowflake | |
| working-directory: ci_testing | |
| - name: dbt-debug | |
| run: dbt debug --profiles-dir ./profiles/snowflake | |
| working-directory: ci_testing | |
| # Changed to compile to save processing time | |
| - name: dbt-compile | |
| run: | | |
| dbt compile --profiles-dir ./profiles/snowflake --vars '{"use_synthetic_data": true,"claims_enabled":true}' | |
| working-directory: ci_testing | |
| - name: Get the result | |
| if: ${{ always() }} | |
| run: echo "${{ steps.dbt-build.outputs.result }}" | |
| shell: bash | |
| snowflake_claims_prov_attribution_enabled: | |
| runs-on: ubuntu-latest | |
| needs: snowflake_claims_enabled | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.9' | |
| - name: Install dbt-core and Snowflake adapter | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install dbt-core==1.8.6 dbt-snowflake | |
| - name: dbt-deps | |
| run: dbt deps --profiles-dir ./profiles/snowflake | |
| working-directory: ci_testing | |
| - name: dbt-debug | |
| run: dbt debug --profiles-dir ./profiles/snowflake | |
| working-directory: ci_testing | |
| # Changed to compile to save processing time | |
| - name: dbt-compile | |
| run: | | |
| dbt compile --profiles-dir ./profiles/snowflake --vars '{"use_synthetic_data": true,"claims_enabled":true,"provider_attribution_enabled":true}' | |
| working-directory: ci_testing | |
| - name: Get the result | |
| if: ${{ always() }} | |
| run: echo "${{ steps.dbt-build.outputs.result }}" | |
| shell: bash | |
| snowflake_clinical_enabled: | |
| runs-on: ubuntu-latest | |
| needs: snowflake_claims_prov_attribution_enabled | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.9' | |
| - name: Install dbt-core and Snowflake adapter | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install dbt-core==1.8.6 dbt-snowflake | |
| - name: dbt-deps | |
| run: dbt deps --profiles-dir ./profiles/snowflake | |
| working-directory: ci_testing | |
| - name: dbt-debug | |
| run: dbt debug --profiles-dir ./profiles/snowflake | |
| working-directory: ci_testing | |
| # Changed to compile to save processing time | |
| - name: dbt-compile | |
| run: | | |
| dbt build --full-refresh --profiles-dir ./profiles/snowflake --vars '{"use_synthetic_data": true,"clinical_enabled":true}' | |
| working-directory: ci_testing | |
| - name: Get the result | |
| if: ${{ always() }} | |
| run: echo "${{ steps.dbt-build.outputs.result }}" | |
| shell: bash | |
| snowflake_prov_attribution_enabled: | |
| runs-on: ubuntu-latest | |
| needs: snowflake_clinical_enabled | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - name: Install dbt-core and Snowflake adapter | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install dbt-core==1.8.6 dbt-snowflake | |
| - name: dbt-deps | |
| run: dbt deps --profiles-dir ./profiles/snowflake | |
| working-directory: ci_testing | |
| - name: dbt-debug | |
| run: dbt debug --profiles-dir ./profiles/snowflake | |
| working-directory: ci_testing | |
| # Changed to compile to save processing time | |
| - name: dbt-compile | |
| run: | | |
| dbt compile --profiles-dir ./profiles/snowflake --vars '{"use_synthetic_data": true,"provider_attribution_enabled":true}' | |
| working-directory: ci_testing | |
| - name: Get the result | |
| if: ${{ always() }} | |
| run: echo "${{ steps.dbt-build.outputs.result }}" | |
| shell: bash |