FIX: Don't pass ignore and force index to init_fitlins_wf

[adelavega]

As it gets handled in the initial layout build

fixes #201

[adelavega]

Let's call this WIP for now, because now I'm getting this error:

         could not run node: fitlins_wf.loader
ERROR:nipype.workflow:could not run node: fitlins_wf.loader
Traceback (most recent call last):
  File "/opt/miniconda-latest/envs/neuro/bin/neuroscout", line 11, in <module>
    load_entry_point('neuroscout-cli', 'console_scripts', 'neuroscout')()
  File "/src/neuroscout/neuroscout_cli/cli.py", line 61, in main
    command(deepcopy(args)).run()
  File "/src/neuroscout/neuroscout_cli/commands/run.py", line 57, in run
    retcode = run_fitlins(fitlins_args)
  File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/fitlins/cli/run.py", line 265, in run_fitlins
    analysis.setup(**selectors)
  File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/bids/analysis/analysis.py", line 94, in setup
    b.setup(input_nodes, drop_na=drop_na, **selectors)
  File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/bids/analysis/analysis.py", line 207, in setup
    **kwargs)
  File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/bids/layout/layout.py", line 1096, in get_collections
    skip_empty=skip_empty, **kwargs)
  File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/bids/variables/io.py", line 93, in load_variables
    dataset = _load_time_variables(layout, dataset, scope=scope, **_kwargs)
  File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/bids/variables/io.py", line 165, in _load_time_variables
    raise ValueError("No functional images that match criteri

[effigies]

It may be that there was a useful function performed by ignoring on some layouts and not on others...

[codecov-io]

Codecov Report

Merging #202 into master will increase coverage by 0.29%.
The diff coverage is 100%.

@@            Coverage Diff             @@
##           master     #202      +/-   ##
==========================================
+ Coverage   76.48%   76.78%   +0.29%     
==========================================
  Files          18       18              
  Lines        1029     1025       -4     
  Branches      181      179       -2     
==========================================
  Hits          787      787              
+ Misses        150      148       -2     
+ Partials       92       90       -2

Flag	Coverage Δ
#ds003	76.78% <100%> (+0.29%)	⬆️

Impacted Files	Coverage Δ
fitlins/workflows/base.py	62.92% <ø> (+2.7%)	⬆️
fitlins/cli/run.py	84.49% <100%> (ø)	⬆️

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[adelavega]

Okay, that should take care of it. It was treating ignore as a list, when it was a string.