MurrellGroup

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80 repositories

CodonMolecularEvolution.jl
Public
Julia
•
MIT License
•2•3•6•7•Updated Jun 17, 2025Jun 17, 2025
Kabsch.jl
Public
Kabsch algorithm for optimally aligning two paired sets of points
julia rmsd kabsch static-arrays gpu-accelerated
Julia
•
MIT License
•0•1•1•0•Updated Jun 14, 2025Jun 14, 2025
ChainStorm.jl
Public
Julia
•
MIT License
•2•12•0•2•Updated Jun 13, 2025Jun 13, 2025
PyBoltz.jl
Public
Julia bindings for Boltz
julia structure-prediction protein-folding boltz
Julia
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Other
•0•1•1•0•Updated Jun 13, 2025Jun 13, 2025
ProtPlot.jl
Public
Protein ribbon plots implemented in Julia using Makie
julia plot protein ribbon makie
Julia
•
MIT License
•1•20•3•0•Updated Jun 12, 2025Jun 12, 2025
Flowfusion.jl
Public
Julia
•
MIT License
•1•14•2•0•Updated Jun 12, 2025Jun 12, 2025
ProteinBenchmarkTools.jl
Public
Julia
•
MIT License
•0•0•0•0•Updated Jun 12, 2025Jun 12, 2025
InvariantPointAttention.jl
Public
Julia implementation of AlphaFold 2's Invariant Point Attention
deep-learning transformer alphafold2
Julia
•
MIT License
•4•6•4•0•Updated Jun 12, 2025Jun 12, 2025
ProteinRefolding.jl
Public
Julia
•
MIT License
•0•0•0•1•Updated Jun 12, 2025Jun 12, 2025
Einops.jl
Public
The amazing Einops, now in Julia
deep-learning julia array tensor-operations einops
Julia
•
MIT License
•1•8•4•0•Updated Jun 11, 2025Jun 11, 2025
TMscore.jl
Public
Julia binding to the TMscore binary for calculating TM-score between proteins
julia protein tm-score
Julia
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Other
•0•3•0•0•Updated Jun 10, 2025Jun 10, 2025
MurrellGroup.github.io
Public
HTML
•0•0•1•0•Updated Jun 3, 2025Jun 3, 2025
LowRankLayers.jl
Public
Julia
•
MIT License
•0•2•0•0•Updated May 28, 2025May 28, 2025
BatchedTransformations.jl
Public
Julia
•
MIT License
•0•0•0•0•Updated May 26, 2025May 26, 2025
lineages
Public
Results from a model of global SARS-CoV-2 lineage competition
1•39•2•1•Updated May 22, 2025May 22, 2025
MolecularEvolution.jl
Public
A Julia framework for developing phylogenetic models
Julia
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MIT License
•4•14•13•4•Updated May 20, 2025May 20, 2025
Onion.jl
Public
It has layers.
Julia
•
MIT License
•3•1•1•0•Updated May 18, 2025May 18, 2025
MurrellGroupRegistry
Public
Julia package registry for MurrellGroup
0•0•1•0•Updated May 18, 2025May 18, 2025
ProFlowDemo.jl
Public
Julia
•
MIT License
•0•0•1•1•Updated May 16, 2025May 16, 2025
ProteinChains.jl
Public
Julia
•
MIT License
•0•4•5•0•Updated May 14, 2025May 14, 2025
ColabMolecularEvolution
Public
A collection of Google Colab notebooks for phylogenetic models
Jupyter Notebook
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MIT License
•0•0•1•0•Updated May 14, 2025May 14, 2025
ForwardBackward.jl
Public
Julia
•
MIT License
•1•2•1•1•Updated May 13, 2025May 13, 2025
DLProteinFormats.jl
Public
Proteins, stored nice and flat.
Julia
•
MIT License
•0•0•0•1•Updated May 12, 2025May 12, 2025
SeededAlignment.jl
Public
Julia
•
MIT License
•0•0•1•0•Updated May 7, 2025May 7, 2025
WebWidgets
Public
HTML
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MIT License
•0•0•0•0•Updated May 3, 2025May 3, 2025
MergedArrays.jl
Public
Minimizing references in arrays of structures for faster I/O and reduced GC pressure.
memory julia read gc
Julia
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MIT License
•0•0•0•0•Updated Apr 28, 2025Apr 28, 2025
CHMMAIRRaAnalyses
Public
Jupyter Notebook
•0•0•0•0•Updated Apr 28, 2025Apr 28, 2025
ColabMPNN.jl
Public
Julia wrapper for the MPNN submodule in the ColabDesign Python package: https://github.com/sokrypton/ColabDesign
Julia
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MIT License
•0•0•0•1•Updated Apr 22, 2025Apr 22, 2025
BackboneIdealization.jl
Public
Julia
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MIT License
•0•0•0•1•Updated Apr 17, 2025Apr 17, 2025
PORPIDpipeline
Public
A pipeline for long-read UMI/PID sequencing of HIV amplicons.
Julia
•1•0•0•0•Updated Apr 16, 2025Apr 16, 2025