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Pull requests: galaxyproject/tools-iuc

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Pull requests list

Add MetaSBT tool suite
#7141 opened Jul 14, 2025 by cumbof Loading…
3 of 5 tasks
Bump busco to 6.0.0
#7139 opened Jul 14, 2025 by bernt-matthias Loading…
3 of 6 tasks
Updating tools/mosdepth from version 0.3.10 to 0.3.11
#7135 opened Jul 14, 2025 by gxydevbot Loading…
1
Updating tools/iqtree from version 2.4.0 to 3.0.1
#7134 opened Jul 14, 2025 by gxydevbot Loading…
Update tooldistillator to version 1.0.0
#7133 opened Jul 11, 2025 by hugolefeuvre Loading…
3 of 5 tasks
2
Add scipy dependencies to krakentools
#7132 opened Jul 11, 2025 by SaimMomin12 • Draft
3 of 5 tasks
1
4
Add CoreProfiler and datamanager
#7130 opened Jul 10, 2025 by clsiguret Loading…
3 of 5 tasks
7
Add compress option pairtool wrapper
#7127 opened Jul 9, 2025 by Smeds Loading…
5 tasks
9
add icon for mitos2
#7121 opened Jul 9, 2025 by bernt-matthias Loading…
3 of 5 tasks
3
Updating tools/orthofinder from version 2.5.5 to 3.1.0
#7118 opened Jul 7, 2025 by gxydevbot Loading…
Add COMEBin
#7110 opened Jul 3, 2025 by SantaMcCloud Loading…
3 of 5 tasks
5
tool wrappers for LexicMap
#7106 opened Jun 30, 2025 by Smeds Loading…
5 tasks
3
Update table compute - Change rangemaker logic to allow pandas like indexing
#7105 opened Jun 30, 2025 by paulzierep Loading…
3 of 5 tasks
1
16
un-quotes the region list so chr1 chr2 will not be passed as an inval…
#7086 opened Jun 28, 2025 by bwlang Loading…
2 of 5 tasks
Add genome_uploader
#7084 opened Jun 27, 2025 by SantaMcCloud Loading…
3 of 5 tasks
5
Add new tool: mapDamage
#7081 opened Jun 27, 2025 by thaulagnon Loading…
3 of 5 tasks
11
Update snapatac2 to version 2.8.0
#7078 opened Jun 26, 2025 by nilchia • Draft
3 of 5 tasks
2
Upgrade samtools dependencies
#7068 opened Jun 20, 2025 by bwlang Loading…
3 of 5 tasks
10
New tool: PhyloPhlAn an integrated pipeline for phylogenetic profiling of genomes and metagenomes
#7067 opened Jun 19, 2025 by neo417 Loading…
3 of 5 tasks
kraken2: fix linter and remove unpaired paired input
#7062 opened Jun 17, 2025 by bernt-matthias • Draft
3 of 7 tasks
add: gotree reformat
#7052 opened Jun 15, 2025 by ammaraziz Loading…
3 of 5 tasks
46
STARSolo add --outBAMsortingBinsN an add a param to force samtools sort
#7051 opened Jun 13, 2025 by pavanvidem Loading…
2
[WIP] added blastfilter script
#7048 opened Jun 13, 2025 by Deeptivarshney • Draft
3 of 5 tasks
4
New tool Addition: Chopper a tool for fast processing (filtering, trimming, ..) of long reads
#7046 opened Jun 12, 2025 by lsterck Loading…
3 of 5 tasks
24
Updating tools/metaphlan from version 4.1.1 to 4.2.2
#7038 opened Jun 9, 2025 by gxydevbot Loading…
@RZ9082
4
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