Metropolis-Hastings root position sampler #53
Merged
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
UniformRootPositionSample
to a local one. The local proposal radius dispatches on theUniformRootPositionSample
subtype and can depend on the total branch length of the tree. (The previous global proposal can be recovered by setting the relative radius to1.0
)metropolis_step
to be compatible with Metropolis-Hastings by introducinglog_proposal(modifier, x, y)
, which is the logarithm of the proposal likelihood ofx
giveny