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Slow cache recovery after sample removal and resume

Status: Open.

#187 In CDCgov/phoenix;

· NureSharafNowerSamia opened on Apr 28, 2025

Merging GripHin Summary Reports with Varying Column Numbers

EnhancementNew feature or requestNew feature or request

Status: Open.

#186 In CDCgov/phoenix;

· mathavanpu opened on Apr 3, 2025

[New Feature Request] - Allow AWS S3 path for the CREATE_SRA_SAMPLESHEET function

Bug: System SpecificSomething isn't working, specific to certain systemsSomething isn't working, specific to certain systems

EnhancementNew feature or requestNew feature or request

Status: Open.

#184 In CDCgov/phoenix;

· vitu1 opened on Jan 27, 2025

Podman support - requested enhancement

EnhancementNew feature or requestNew feature or request

Status: Open.

#181 In CDCgov/phoenix;

· jvhagey opened on Jan 22, 2025

Additional output columns needed for Terra.bio

EnhancementNew feature or requestNew feature or request

Status: Open.

#178 In CDCgov/phoenix;

· jvhagey opened on Dec 11, 2024

Considering Bakta for genome annotation - requested enhancement

Status: Open.

#177 In CDCgov/phoenix;

· vascokarla opened on Dec 2, 2024

Refactor failed summary handling

Low Severity Bug: UniversalSomething isn't working, but not wrong or killing pipelineSomething isn't working, but not wrong or killing pipeline

Status: Open.

#152 In CDCgov/phoenix;

· slsevilla opened on Apr 4, 2024

Move params checks upstream to main.nf

Status: Open.

#151 In CDCgov/phoenix;

· slsevilla opened on Apr 1, 2024

handle failed samples via filtering

EnhancementNew feature or requestNew feature or request

Status: Open.

#147 In CDCgov/phoenix;

· slsevilla opened on Mar 28, 2024

[BUG] - Resume flag restarts pipeline at SPADES, even if pipeline has completed downstream steps

Low Severity Bug: UniversalSomething isn't working, but not wrong or killing pipelineSomething isn't working, but not wrong or killing pipeline

Status: Open.

#129 In CDCgov/phoenix;

· slsevilla opened on Jan 20, 2024

Create message/output when downstream and QC analysis is not complete or is interrupted due to taxa not assigned (taxa is not bacterial)

EnhancementNew feature or requestNew feature or request

Status: Open.

#123 In CDCgov/phoenix;

· MOREYCK opened on Oct 2, 2023

pigz error in PHOENIX:PHOENIX_EXTERNAL:ASSET_CHECK process on GCP VM

Bug: System SpecificSomething isn't working, specific to certain systemsSomething isn't working, specific to certain systems

Status: Open.

#120 In CDCgov/phoenix;

· kprus opened on Aug 18, 2023