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I ran this under cygwin from a git clone of this project. But the calabash script will error due to files that are missing from this github (but present in the svn). For example, the "./conf/*" directory is not in this project, but it is in the svn.
For anyone looking to use this library:
svn export https://subversion.le-tex.de/common/pdf2fxl/ ~/local_svn_path
Edit ./pdf2fxl.sh to correct the poppler path (it should be "POPPLER=/usr/bin/pdftohtml"). I had to comment out the line "POPPLER=/usr/local/poppler/bin/pdftohtml".
Also, note to the reader: make sure that you're using a 1.x version of java, i.e.:
export PATH="/cygdrive/C/Program Files/Java/jdk1.8.0_131/bin:$PATH"
export JAVA_HOME="/cygdrive/C/Program Files/Java/jdk1.8.0_131"
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