Release 0.12.20, with improved testing.

Author: lunebellec

commands/misc/niak_gb_vars.m

@@ -78,9 +78,9 @@
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 
 %% NIAK version
-gb_niak_version = '0.12.19'; 
+gb_niak_version = '0.12.20'; 
 gb_niak_url_test_niak = 'http://www.nitrc.org/frs/download.php/7241/data_test_niak_mnc1.zip';
-gb_niak_url_target_niak = '';
+gb_niak_url_target_niak = 'http://www.nitrc.org/frs/download.php/7256/target_test_niak_mnc1-0.12.20.zip';
 
 %% Is the environment Octave or Matlab ?
 if exist('OCTAVE_VERSION','builtin')    

commands/read_write/niak_grab_all_preprocess.m

@@ -247,10 +247,10 @@
 files.quality_control.group_coregistration.func.mean_std     = [path_qc 'group_coregistration' filesep 'func_mean_std_stereonl' ext];
 
 %% Grab the results of quality control -- CORSICA
-files.quality_control.group_corsica.pdf  = [path_qc 'group_corsica' filesep 'func_ratio_var_corsica_stereonl_fit.pdf'];
-files.quality_control.group_corsica.csv  = [path_qc 'group_corsica' filesep 'func_ratio_var_corsica_stereonl_fit.csv'];
-files.quality_control.group_corsica.mean = [path_qc 'group_corsica' filesep 'func_ratio_var_corsica_stereonl_mean' ext];
-files.quality_control.group_corsica.std  = [path_qc 'group_corsica' filesep 'func_ratio_var_corsica_stereonl_std' ext];
+% files.quality_control.group_corsica.pdf  = [path_qc 'group_corsica' filesep 'func_ratio_var_corsica_stereonl_fit.pdf'];  % Commented out because this is an optional output
+% files.quality_control.group_corsica.csv  = [path_qc 'group_corsica' filesep 'func_ratio_var_corsica_stereonl_fit.csv'];  % Commented out because this is an optional output
+% files.quality_control.group_corsica.mean = [path_qc 'group_corsica' filesep 'func_ratio_var_corsica_stereonl_mean' ext]; % Commented out because this is an optional output
+% files.quality_control.group_corsica.std  = [path_qc 'group_corsica' filesep 'func_ratio_var_corsica_stereonl_std' ext];  % Commented out because this is an optional output 
 
 %% Grab the results of quality control -- MOTION
 files.quality_control.group_motion.between_run.csv = [path_qc 'group_motion' filesep 'qc_coregister_between_runs_group.csv'];
@@ -285,8 +285,8 @@
             run = list_run{num_r};
 
             % CORSICA
-            files.quality_control.individual.(subject).corsica.pdf.(session).(run)  = [path_qc subject filesep 'corsica' filesep 'fmri_' subject '_' session '_' run '_cor_sica_space_qc_corsica.pdf'];
-            files.quality_control.individual.(subject).corsica.var.(session).(run)  = [path_qc subject filesep 'corsica' filesep 'qc_corsica_var_' subject '_' session '_' run '_funcstereonl' ext];
+            % files.quality_control.individual.(subject).corsica.pdf.(session).(run)  = [path_qc subject filesep 'corsica' filesep 'fmri_' subject '_' session '_' run '_cor_sica_space_qc_corsica.pdf']; % Commented out because this is an optional output
+            % files.quality_control.individual.(subject).corsica.var.(session).(run)  = [path_qc subject filesep 'corsica' filesep 'qc_corsica_var_' subject '_' session '_' run '_funcstereonl' ext]; % Commented out because this is an optional output
 
             % CONFOUNDS
             for num_c = 1:length(list_conf)