[automation] Auto-update linters version, help and documentation (#5876)

* [automation] Auto-update linters version, help and documentation

* [MegaLinter] Apply linters fixes

---------

Co-authored-by: nvuillam <[email protected]>

Author: nvuillam

.automation/generated/linter-helps.json

@@ -60,15 +60,15 @@
     "markdownlint": "0.45.0",
     "misspell": "0.3.4",
     "mypy": "1.17.0",
-    "npm-groovy-lint": "15.2.0",
+    "npm-groovy-lint": "15.2.1",
     "npm-package-json-lint": "9.0.0",
     "perlcritic": "1.156",
     "php": "7.4.26",
     "php-cs-fixer": "3.84.0",
     "phpcs": "3.13.2",
     "phplint": "9.6.2",
     "phpstan": "2.1.20",
-    "pmd": "7.15.0",
+    "pmd": "7.16.0",
     "powershell": "7.5.2",
     "powershell_formatter": "7.5.2",
     "prettier": "3.6.2",
@@ -100,7 +100,7 @@
     "shellcheck": "0.10.0",
     "shfmt": "3.12.0",
     "snakefmt": "0.11.0",
-    "snakemake": "9.8.1",
+    "snakemake": "9.8.2",
     "spectral": "6.15.0",
     "sql-lint": "1.0.0",
     "sqlfluff": "3.4.2",
@@ -116,7 +116,7 @@
     "tflint": "0.58.1",
     "trivy": "0.64.1",
     "trivy-sbom": "0.64.1",
-    "trufflehog": "3.90.1",
+    "trufflehog": "3.90.2",
     "ts-standard": "12.0.2",
     "tsqllint": "1.16.0.0",
     "v8r": "5.1.0",

.automation/generated/linter-versions.json

@@ -171,6 +171,10 @@ Note: Can be used with `oxsecurity/megalinter@beta` in your GitHub Action mega-l
   - [roslynator](https://github.com/dotnet/Roslynator) from 0.10.1.0 to **0.10.2.0** on 2025-07-27
   - [kubescape](https://github.com/kubescape/kubescape) from 3.0.34 to **3.0.36** on 2025-07-27
   - [phpstan](https://phpstan.org/) from 2.1.19 to **2.1.20** on 2025-07-27
+  - [npm-groovy-lint](https://nvuillam.github.io/npm-groovy-lint/) from 15.2.0 to **15.2.1** on 2025-07-28
+  - [pmd](https://pmd.github.io/) from 7.15.0 to **7.16.0** on 2025-07-28
+  - [trufflehog](https://github.com/trufflesecurity/trufflehog) from 3.90.1 to **3.90.2** on 2025-07-28
+  - [snakemake](https://snakemake.github.io/) from 9.8.1 to **9.8.2** on 2025-07-28
 <!-- linter-versions-end -->
 
 ## [v8.8.0] - 2024-06-15

CHANGELOG.md

@@ -23,7 +23,7 @@
 [![MegaLinter](https://github.com/oxsecurity/megalinter/workflows/MegaLinter/badge.svg?branch=main)](https://github.com/oxsecurity/megalinter/actions?query=workflow%3AMegaLinter+branch%3Amain)
 [![codecov](https://codecov.io/gh/oxsecurity/megalinter/branch/main/graph/badge.svg)](https://codecov.io/gh/oxsecurity/megalinter)
 <!-- gh-dependents-info-used-by-start -->
-[![Generated by github-dependents-info](https://img.shields.io/static/v1?label=Used%20by&message=2714&color=informational&logo=slickpic)](https://github.com/oxsecurity/megalinter/blob/main/./docs/used-by-stats.md)<!-- gh-dependents-info-used-by-end -->
+[![Generated by github-dependents-info](https://img.shields.io/static/v1?label=Used%20by&message=2688&color=informational&logo=slickpic)](https://github.com/oxsecurity/megalinter/blob/main/./docs/used-by-stats.md)<!-- gh-dependents-info-used-by-end -->
 [![Secured with Trivy](https://img.shields.io/badge/Trivy-secured-green?logo=docker)](https://github.com/aquasecurity/trivy)
 [![GitHub contributors](https://img.shields.io/github/contributors/oxsecurity/megalinter.svg)](https://github.com/oxsecurity/megalinter/graphs/contributors/)
 [![GitHub Sponsors](https://img.shields.io/github/sponsors/nvuillam)](https://github.com/sponsors/nvuillam)