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‎joss.07320/10.21105.joss.07320.crossref.xml

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168+
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169+
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170+
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172+
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173+
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183+
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188+
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189+
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190+
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191+
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192+
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198+
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199+
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200+
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201+
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203+
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205+
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206+
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207+
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208+
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210+
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211+
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212+
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213+
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214+
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215+
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216+
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217+
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221+
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223+
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228+
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230+
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231+
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232+
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233+
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234+
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235+
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237+
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238+
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239+
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245+
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247+
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248+
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249+
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250+
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251+
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252+
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253+
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254+
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255+
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256+
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257+
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258+
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260+
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262+
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263+
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264+
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265+
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266+
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268+
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269+
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270+
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271+
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272+
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273+
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278+
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279+
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283+
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285+
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286+
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287+
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290+
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291+
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292+
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293+
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