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Significant variation in GRNBoost2 results with minor cell subsampling (removing one cell) in pySCENIC

Status: Open.

#623 In aertslab/pySCENIC;

· jklupup opened on Jul 15, 2025

Attribute errors caused by dependency conflicts in "binarize()"

Status: Open.

#622 In aertslab/pySCENIC;

· holazzh opened on Jun 24, 2025

[BUG] pyscenic ctx error

bugSomething isn't workingSomething isn't working

Status: Open.

#621 In aertslab/pySCENIC;

· Sophielsn opened on Jun 23, 2025

Manually Adding ChIP-Seq Data

Status: Open.

#619 In aertslab/pySCENIC;

· rayajallad opened on May 28, 2025

[results] After df2regulons(), gene name formatting in each regulon is weird

questionFurther information is requestedFurther information is requested

Status: Open.

#618 In aertslab/pySCENIC;

· redbybeing opened on May 28, 2025

Issue with the "Intersection of gene_names and tf_names is empty" while running the grnboost2 step of pySCENIC in hpc

Status: Open.

#616 In aertslab/pySCENIC;

· npees1 opened on May 24, 2025

[BUG] Substantially different results when using <code>AUCell</code> vs <code>pyscenic.aucell</code>

bugSomething isn't workingSomething isn't working

Status: Open.

#615 In aertslab/pySCENIC;

· PauBadiaM opened on May 12, 2025

Batch effet

Status: Open.

#614 In aertslab/pySCENIC;

· RunyuXia opened on May 11, 2025

What do the (+) and (-) represent respectively?

questionFurther information is requestedFurther information is requested

Status: Open.

#613 In aertslab/pySCENIC;

· CampingOnSeabed opened on Apr 21, 2025

[BUG] Output directory is empty

bugSomething isn't workingSomething isn't working

Status: Open.

#611 In aertslab/pySCENIC;

· Fugwaaaa opened on Apr 2, 2025

[BUG] My output directory don't have motif enrichment result tsv

bugSomething isn't workingSomething isn't working

Status: Open.

#610 In aertslab/pySCENIC;

· Fugwaaaa opened on Mar 30, 2025

[BUG] pyscenic grn errors: Resource temporarily unavailable &amp; empty intersection

bugSomething isn't workingSomething isn't working

Status: Open.

#609 In aertslab/pySCENIC;

· radiasso opened on Mar 18, 2025