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$SUBJECT_SELECTION_FLAG in yaml file wasn't set correctly

bugIssues noting problems and PRs fixing those problems.Issues noting problems and PRs fixing those problems.

Status: Open.

#307 In PennLINC/babs;

· tientong98 opened on Jun 11, 2025

1

sbref is added to BIDS filter file when it can't be used

bugIssues noting problems and PRs fixing those problems.Issues noting problems and PRs fixing those problems.

Status: Open.

#305 In PennLINC/babs;

· tsalo opened on May 29, 2025

if merge is run prior to sync-code, sync-code will fail

bugIssues noting problems and PRs fixing those problems.Issues noting problems and PRs fixing those problems.

Status: Open.

#303 In PennLINC/babs;

· tientong98 opened on May 19, 2025

babs status does not correctly show how many jobs have failed

bugIssues noting problems and PRs fixing those problems.Issues noting problems and PRs fixing those problems.

Status: Open.

#298 In PennLINC/babs;

· B-Sevchik opened on May 13, 2025



babs status after babs merge lists 0 results because the branches have been deleted

bugIssues noting problems and PRs fixing those problems.Issues noting problems and PRs fixing those problems.

Status: Open.

#295 In PennLINC/babs;

· mattcieslak opened on Apr 29, 2025

[DOCS] update BABS programs (CLIs) figure

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#283 In PennLINC/babs;

· zhao-cy opened on Apr 5, 2025

Make qsirecon expand outputs in the datalad run

enhancementNew feature or requestNew feature or request

Status: Open.

#278 In PennLINC/babs;

· mattcieslak opened on Apr 1, 2025

installation page missing info on installing babs

bugIssues noting problems and PRs fixing those problems.Issues noting problems and PRs fixing those problems.

Status: Open.

#276 In PennLINC/babs;

· audreycluo opened on Mar 31, 2025

1 comment

fmriprep not added to output directory name

bugIssues noting problems and PRs fixing those problems.Issues noting problems and PRs fixing those problems.

Status: Open.

#274 In PennLINC/babs;

· smeisler opened on Mar 30, 2025

3 comments

Infer container name from container dataset when possible

enhancementNew feature or requestNew feature or request

Status: Open.

#247 In PennLINC/babs;

· tsalo opened on Mar 21, 2025

Add HTCondor support

enhancementNew feature or requestNew feature or request

schedulerIssues related to job schedulers (e.g., SLURM, SGE)Issues related to job schedulers (e.g., SLURM, SGE)

Status: Open.

#242 In PennLINC/babs;

· tsalo opened on Mar 21, 2025

Give users control over container system

containerIssues related to container software (e.g., Singularity, Apptainer)Issues related to container software (e.g., Singularity, Apptainer)

enhancementNew feature or requestNew feature or request

Status: Open.

#240 In PennLINC/babs;

· tsalo opened on Mar 21, 2025

Replace --list_sub_file with BIDS-format TSV file

breaking-changePRs that change results or interfaces.PRs that change results or interfaces.

enhancementNew feature or requestNew feature or request

Status: Open.

#224 In PennLINC/babs;

· tsalo opened on Mar 20, 2025

1

Document user stories

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#209 In PennLINC/babs;

· tsalo opened on Mar 19, 2025

4 comments

test freesurfer bids app with BABS

Status: Open.

#208 In PennLINC/babs;

· yibeichan opened on Mar 19, 2025

3 comments

Issue tracking major complaints about BABS

7 / 1163% completed

Status: Open.

#206 In PennLINC/babs;

· mattcieslak opened on Mar 19, 2025

Allow babs-init to create the container dataset

enhancementNew feature or requestNew feature or request

Status: Open.

#174 In PennLINC/babs;

· tsalo opened on Jul 2, 2024

[ENH] Add workflow for processing and adding new subjects to BABS results

enhancementNew feature or requestNew feature or request

Status: Open.

#171 In PennLINC/babs;

· mattcieslak opened on Mar 5, 2024

Make e2e testing run on PRs as well as e.g. weekly

enhancementNew feature or requestNew feature or request

Status: Open.

#170 In PennLINC/babs;

· yarikoptic opened on Mar 5, 2024

[DOCS] docs enhancements from Austin

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#154 In PennLINC/babs;

· zhao-cy opened on Nov 3, 2023

2 comments

[FIX] path generated by BABS is too long for freesurfer to function/run properly

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

Status: Open.

#138 In PennLINC/babs;

· yibeichan opened on Aug 24, 2023

15 comments

[DOCS] minor enhancements in docs after Sydney's review

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#115 In PennLINC/babs;

· zhao-cy opened on Jul 12, 2023

 ·  

manuscript ready

[tests] infrastructure for automatic pytest of babs-submit and babs-status

Status: Open.

#113 In PennLINC/babs;

· zhao-cy opened on Jul 10, 2023

 ·  

Enhancements and features on the roadmap

[ENH] incorporating configs from --call-fmt when babs-init

roadmap

Status: Open.

#112 In PennLINC/babs;

· zhao-cy opened on Jul 10, 2023

 ·  

Enhancements and features on the roadmap

[DOCS] NMIND checklist: on roadmap

roadmap

Status: Open.

#111 In PennLINC/babs;

· zhao-cy opened on Jul 7, 2023

 ·  

Enhancements and features on the roadmap