CITATION.cff

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title: >-
  BABS : BIDS App Bootstrap
message: >-
  If you use this software, please cite it using the
  metadata from this file, as well as the
  Imaging Neuroscience (doi:10.1162/imag_a_00074) and
  Biological Psychiatry (doi:10.1016/j.biopsych.2024.02.056) papers.
type: software
authors:
  - given-names: Chenying
    family-names: Zhao
    orcid: "https://orcid.org/0000-0001-7878-6259"
  - given-names: Dorota
    family-names: Jarecka
  - given-names: Sydney
    family-names: Covitz
    affiliation: Stanford University
    orcid: "https://orcid.org/0000-0002-7430-4125"
  - given-names: Yibei
    family-names: Chen
  - given-names: Simon B.
    family-names: Eickhoff
  - given-names: Damien
    family-names: Fair
    affiliation: University of Minnesota
    orcid: "https://orcid.org/0000-0001-8602-393X"
  - given-names: Alexandre R.
    family-names: Franco
  - given-names: Yaroslav O.
    family-names: Halchenko
  - given-names: Timothy J.
    family-names: Hendrickson
  - given-names: Felix
    family-names: Hoffstaedter
  - given-names: Audrey
    family-names: Houghton
  - given-names: Gregory
    family-names: Kiar
  - given-names: Austin
    family-names: Macdonald
  - given-names: Kahini
    family-names: Mehta
    email: kahini.mehta@pennmedicine.upenn.edu
    affiliation: Columbia University
    orcid: "https://orcid.org/0000-0001-9466-100X"
  - given-names: Michael P.
    family-names: Milham
  - given-names: Taylor
    family-names: Salo
    email: salot@pennmedicine.upenn.edu
    affiliation:Penn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, USA; Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
    orcid: "https://orcid.org/0000-0001-9813-3167"
  - given-names: Michael
    family-names: Hanke
  - given-names: Satrajit S.
    family-names: Ghosh
  - given-names: Brooke L.
    family-names: Sevchik
    affiliation: Penn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, USA; Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  - given-names: S. Parker
    family-names: Singleton
    affiliation: Penn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, USA; Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
    orcid: "https://orcid.org/0000-0002-7102-7820"
  - given-names: Tien
    family-names: Tong
    affiliation: Penn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, USA; Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
    orcid: 'https://orcid.org/0000-0002-1940-3198'
  - given-names: Matthew
    family-names: Cieslak
    email: matthew.cieslak@pennmedicine.upenn.edu
    affiliation: Penn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, USA; Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
    orcid: "https://orcid.org/0000-0002-1931-4734"
  - given-names: Steven
    family-names: Meisler
    orcid: "https://orcid.org/0000-0002-8888-1572"
    affiliation: Penn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, USA; Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
  - given-names: Theodore
    family-names: Satterthwaite
    affiliation: Penn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, USA; Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
    orcid: "https://orcid.org/0000-0001-7072-9399"
identifiers:
  - type: doi
    value: 10.5281/zenodo.8184642
    description: The Zenodo DOI
repository-code: "https://github.com/PennLINC/babs"
url: "https://pennlinc-babs.readthedocs.io/"
abstract: >-
  BIDS App Bootstrap (BABS) is a reproducible, generalizable, and scalable
  Python package for BIDS App analysis of large datasets.
  It uses DataLad and adopts the FAIRly big framework.
  Currently, BABS supports jobs submissions and audits on SLURM
  high performance computing (HPC) clusters.
keywords:
  - BIDS-App
  - Neuroimaging
license: MIT
version: 0.0.10
date-released: "2025-03-24"