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Add command to apply inheritance principle to dataset

0 / 10% completed

enhancementNew feature or requestNew feature or request

priority: low

Status: Open.

Feature

#302 In PennLINC/CuBIDS;

· tsalo opened on Feb 13, 2024

1 comment



Add command to write inherited metadata to bottom-level files

enhancementNew feature or requestNew feature or request

priority: low

Status: Open.

Feature

#387 In PennLINC/CuBIDS;

· tsalo opened on Jan 16, 2025

Does CuBIDS account for inheritance with variants' associated files?

0 / 10% completed

enhancementNew feature or requestNew feature or request

priority: high

Status: Open.

Feature

#303 In PennLINC/CuBIDS;

· tsalo opened on Feb 14, 2024

account for sbref suffix for apply

bugSomething isn't workingSomething isn't working

priority: high

Status: Open.

Bug

#148 In PennLINC/CuBIDS;

· scovitz opened on Dec 19, 2021

1 comment



Add command to replace IntendedFor fields with B0FieldSource/B0FieldIdentifier

enhancementNew feature or requestNew feature or request

priority: medium

Status: Open.

Feature

#274 In PennLINC/CuBIDS;

· tsalo opened on Dec 4, 2023

8 comments



Limit CuBIDS filename changes to the acq entity and datatype folder

breaking-change

enhancementNew feature or requestNew feature or request

priority: medium

Status: Open.

Feature

#301 In PennLINC/CuBIDS;

· tsalo opened on Feb 12, 2024

1 comment



Write out acq entity modifications to an acquisitions.tsv file

enhancementNew feature or requestNew feature or request

priority: medium

Status: Open.

Feature

#305 In PennLINC/CuBIDS;

· tsalo opened on Feb 15, 2024



Hierarchical clustering on parameters

enhancementNew feature or requestNew feature or request

priority: high

Status: Open.

Feature

#355 In PennLINC/CuBIDS;

· mattcieslak opened on Jan 13, 2025

make has fieldmap optional

enhancementNew feature or requestNew feature or request

priority: low

Status: Open.

Feature

#260 In PennLINC/CuBIDS;

· scovitz opened on Jun 2, 2023



cubids-report command

enhancementNew feature or requestNew feature or request

priority: medium

Status: Open.

Feature

#240 In PennLINC/CuBIDS;

· yarikoptic opened on Oct 21, 2022

2 comments



allow CuBIDS to concatenate subjects together from separate directories to be able to run with data on the S3

enhancementNew feature or requestNew feature or request

priority: low

Status: Open.

Feature

#145 In PennLINC/CuBIDS;

· audreymhoughton opened on Nov 30, 2021

6 comments

add plots of summary table

enhancementNew feature or requestNew feature or request

priority: medium

Status: Open.

Feature

#146 In PennLINC/CuBIDS;

· scovitz opened on Dec 11, 2021

7 comments



--modality flag

enhancementNew feature or requestNew feature or request

priority: low

Status: Open.

Feature

#122 In PennLINC/CuBIDS;

· scovitz opened on Jun 9, 2021

1 comment



Rename main module (cubids.cubids) to prevent name collisions

refactor

Status: Open.

Task

#390 In PennLINC/CuBIDS;

· tsalo opened on Jan 16, 2025

Drop try/except in get_param_groups_dataframes

bugSomething isn't workingSomething isn't working

Status: Open.

#449 In PennLINC/CuBIDS;

· tsalo opened on Mar 3, 2025

Update the issue templates to include new issue features

maintenance

Status: Open.

Task

#399 In PennLINC/CuBIDS;

· tsalo opened on Jan 17, 2025

Remove HISTORY and AUTHORS pages and link to release notes for changelog

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

Task

#405 In PennLINC/CuBIDS;

· tsalo opened on Jan 17, 2025

Replace hardcoded separators with os.sep (or pathlib stuff)

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#368 In PennLINC/CuBIDS;

· tsalo opened on Jan 15, 2025

1



review commented out code & ominous notes

maintenance

Status: Open.

#389 In PennLINC/CuBIDS;

· singlesp opened on Jan 16, 2025

Convert test skeleton dictionaries to YAML files

testing

Status: Open.

#412 In PennLINC/CuBIDS;

· tsalo opened on Jan 18, 2025

Split out CuBIDS.change_filename into file- and modality-specific functions

refactor

Status: Open.

#422 In PennLINC/CuBIDS;

· tsalo opened on Jan 31, 2025

Break up CuBIDS class into functions as much as possible

0 / 10% completed

refactor

Status: Open.

#418 In PennLINC/CuBIDS;

· tsalo opened on Jan 30, 2025

2 comments

Store CuBIDS code directory as attribute instead of existence of code directory

refactor

Status: Open.

#420 In PennLINC/CuBIDS;

· tsalo opened on Jan 31, 2025

Use +s to delimit variant elements

enhancementNew feature or requestNew feature or request

Status: Open.

#433 In PennLINC/CuBIDS;

· tsalo opened on Feb 12, 2025

1

Update BIDS schema automatically/regularly

enhancementNew feature or requestNew feature or request

Status: Open.

#427 In PennLINC/CuBIDS;

· tsalo opened on Feb 5, 2025